3D structure

PDB id
_4V4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Experimental method
Resolution

Loop

Sequence
AUGGUAAG*UACAAGCAG*CGUGC*GAG*CAUGAGUAA*UGAAAUUGAACUG*CUAC*GCGCAGG*CCCACG*CCGGUAAG*CGAGGU
Length
78 nucleotides
Bulged bases
4V4S|1|BA|C|527, 4V4S|1|BA|A|528, 4V4S|1|BA|C|531, 4V4S|1|BA|A|532, 4V4S|1|BA|U|562, 4V4S|1|BA|A|2015, 4V4S|1|BA|A|2790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4S|1|BA|A|8
4V4S|1|BA|U|9
4V4S|1|BA|G|10
4V4S|1|BA|G|11
4V4S|1|BA|U|12
4V4S|1|BA|A|13
4V4S|1|BA|A|14
4V4S|1|BA|G|15
*
4V4S|1|BA|U|525
4V4S|1|BA|A|526
4V4S|1|BA|C|527
4V4S|1|BA|A|528
4V4S|1|BA|A|529
4V4S|1|BA|G|530
4V4S|1|BA|C|531
4V4S|1|BA|A|532
4V4S|1|BA|G|533
*
4V4S|1|BA|C|560
4V4S|1|BA|G|561
4V4S|1|BA|U|562
4V4S|1|BA|G|563
4V4S|1|BA|C|564
*
4V4S|1|BA|G|577
4V4S|1|BA|A|578
4V4S|1|BA|G|579
*
4V4S|1|BA|C|1261
4V4S|1|BA|A|1262
4V4S|1|BA|U|1263
4V4S|1|BA|G|1264
4V4S|1|BA|A|1265
4V4S|1|BA|G|1266
4V4S|1|BA|U|1267
4V4S|1|BA|A|1268
4V4S|1|BA|A|1269
*
4V4S|1|BA|U|2011
4V4S|1|BA|G|2012
4V4S|1|BA|A|2013
4V4S|1|BA|A|2014
4V4S|1|BA|A|2015
4V4S|1|BA|U|2016
4V4S|1|BA|U|2017
4V4S|1|BA|G|2018
4V4S|1|BA|A|2019
4V4S|1|BA|A|2020
4V4S|1|BA|C|2021
4V4S|1|BA|U|2022
4V4S|1|BA|G|2023
*
4V4S|1|BA|C|2040
4V4S|1|BA|U|2041
4V4S|1|BA|A|2042
4V4S|1|BA|C|2043
*
4V4S|1|BA|G|2625
4V4S|1|BA|C|2626
4V4S|1|BA|G|2627
4V4S|1|BA|C|2628
4V4S|1|BA|A|2629
4V4S|1|BA|G|2630
4V4S|1|BA|G|2631
*
4V4S|1|BA|C|2787
4V4S|1|BA|C|2788
4V4S|1|BA|C|2789
4V4S|1|BA|A|2790
4V4S|1|BA|C|2791
4V4S|1|BA|G|2792
*
4V4S|1|BA|C|2803
4V4S|1|BA|C|2804
4V4S|1|BA|G|2805
4V4S|1|BA|G|2807
4V4S|1|BA|U|2808
4V4S|1|BA|A|2809
4V4S|1|BA|A|2810
4V4S|1|BA|G|2811
*
4V4S|1|BA|C|2889
4V4S|1|BA|G|2891
4V4S|1|BA|A|2892
4V4S|1|BA|G|2893
4V4S|1|BA|G|2894
4V4S|1|BA|U|2895

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L32
Chain BE
50S ribosomal protein L3
Chain BF
50S ribosomal protein L4
Chain BN
50S ribosomal protein L13
Chain BR
50S ribosomal protein L17
Chain BU
50S ribosomal protein L20
Chain BV
50S ribosomal protein L21
Chain BW
50S ribosomal protein L22

Coloring options:

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