Loop J11_9E6Q

3D structure

PDB id: _9E6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Experimental method
Resolution

Loop

Sequence: GGCAAAG*CUACAGUG*UUAC*GGG*CG*CACCU(OMC)*GGAC*GCGCUG*CGUU*AC*GC
Length: 48 nucleotides
Bulged bases: 9E6Q|1|1|U|643, 9E6Q|1|1|U|2743
QA status: Modified nucleotides: OMC

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9E6Q|1|1|G|3
9E6Q|1|1|G|4
9E6Q|1|1|C|5
9E6Q|1|1|A|6
9E6Q|1|1|A|7
9E6Q|1|1|A|8
9E6Q|1|1|G|9
*
9E6Q|1|1|C|553
9E6Q|1|1|U|554
9E6Q|1|1|A|555
9E6Q|1|1|C|556
9E6Q|1|1|A|557
9E6Q|1|1|G|558
9E6Q|1|1|U|559
9E6Q|1|1|G|560
*
9E6Q|1|1|U|642
9E6Q|1|1|U|643
9E6Q|1|1|A|644
9E6Q|1|1|C|645
*
9E6Q|1|1|G|658
9E6Q|1|1|G|659
9E6Q|1|1|G|660
*
9E6Q|1|1|C|1388
9E6Q|1|1|G|1389
*
9E6Q|1|1|C|2138
9E6Q|1|1|A|2139
9E6Q|1|1|C|2140
9E6Q|1|1|C|2141
9E6Q|1|1|U|2142
9E6Q|1|1|OMC|2143
*
9E6Q|1|1|G|2160
9E6Q|1|1|G|2161
9E6Q|1|1|A|2162
9E6Q|1|1|C|2163
*
9E6Q|1|1|G|2739
9E6Q|1|1|C|2740
9E6Q|1|1|G|2741
9E6Q|1|1|C|2742
9E6Q|1|1|U|2743
9E6Q|1|1|G|2744
*
9E6Q|1|1|C|2900
9E6Q|1|1|G|2901
9E6Q|1|1|U|2902
9E6Q|1|1|U|2903
*
9E6Q|1|1|A|2926
9E6Q|1|1|C|2927
*
9E6Q|1|1|G|3019
9E6Q|1|1|C|3020

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain AB: Large ribosomal subunit protein uL3
Chain AC: Large ribosomal subunit protein uL4
Chain AG: Large ribosomal subunit protein uL13
Chain AT: Large ribosomal subunit protein uL22
Chain Ab: Large ribosomal subunit protein eL32

J11_9E6Q_001