J13_4V4G_006
3D structure
- PDB id
- _4V4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Experimental method
- Resolution
Loop
- Sequence
- AUAGUAAGG*UUACAAGCAG*CGUGC*GAG*CAUGAGUAACGAUAAAA*UUC*GCGC*GGUGAAAUUGAAUUG*CUAC*GCGCAG*CCACUGUUCAGGUAAGACUCCC*GGGUUAAGAGG*UGCUCAUCAGUCGAGGU
- Length
- 126 nucleotides
- Bulged bases
- 4V4G|1|BB|C|541, 4V4G|1|BB|U|571, 4V4G|1|BB|U|1280, 4V4G|1|BB|G|1284, 4V4G|1|BB|A|1285, 4V4G|1|BB|U|1286, 4V4G|1|BB|A|1287, 4V4G|1|BB|A|1288, 4V4G|1|BB|C|1663, 4V4G|1|BB|G|1664, 4V4G|1|BB|U|2004, 4V4G|1|BB|C|2607, 4V4G|1|BB|A|2770, 4V4G|1|BB|C|2771, 4V4G|1|BB|U|2772, 4V4G|1|BB|G|2773, 4V4G|1|BB|U|2774, 4V4G|1|BB|U|2778, 4V4G|1|BB|C|2779, 4V4G|1|BB|A|2780, 4V4G|1|BB|A|2784, 4V4G|1|BB|U|2807, 4V4G|1|BB|U|2808, 4V4G|1|BB|A|2809, 4V4G|1|BB|G|2865, 4V4G|1|BB|G|2868
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4G|1|BB|A|8
4V4G|1|BB|U|9
4V4G|1|BB|A|10
4V4G|1|BB|G|11
4V4G|1|BB|U|12
4V4G|1|BB|A|13
4V4G|1|BB|A|14
4V4G|1|BB|G|15
4V4G|1|BB|G|16
*
4V4G|1|BB|U|534
4V4G|1|BB|U|535
4V4G|1|BB|A|536
4V4G|1|BB|C|537
4V4G|1|BB|A|538
4V4G|1|BB|A|539
4V4G|1|BB|G|540
4V4G|1|BB|C|541
4V4G|1|BB|A|542
4V4G|1|BB|G|543
*
4V4G|1|BB|C|569
4V4G|1|BB|G|570
4V4G|1|BB|U|571
4V4G|1|BB|G|572
4V4G|1|BB|C|573
*
4V4G|1|BB|G|586
4V4G|1|BB|A|587
4V4G|1|BB|G|588
*
4V4G|1|BB|C|1274
4V4G|1|BB|A|1275
4V4G|1|BB|U|1276
4V4G|1|BB|G|1277
4V4G|1|BB|A|1278
4V4G|1|BB|G|1279
4V4G|1|BB|U|1280
4V4G|1|BB|A|1281
4V4G|1|BB|A|1282
4V4G|1|BB|C|1283
4V4G|1|BB|G|1284
4V4G|1|BB|A|1285
4V4G|1|BB|U|1286
4V4G|1|BB|A|1287
4V4G|1|BB|A|1288
4V4G|1|BB|A|1289
4V4G|1|BB|A|1290
*
4V4G|1|BB|U|1306
4V4G|1|BB|U|1307
4V4G|1|BB|C|1308
*
4V4G|1|BB|G|1662
4V4G|1|BB|C|1663
4V4G|1|BB|G|1664
4V4G|1|BB|C|1665
*
4V4G|1|BB|G|1992
4V4G|1|BB|G|1993
4V4G|1|BB|U|1994
4V4G|1|BB|G|1995
4V4G|1|BB|A|1996
4V4G|1|BB|A|1997
4V4G|1|BB|A|1998
4V4G|1|BB|U|1999
4V4G|1|BB|U|2000
4V4G|1|BB|G|2001
4V4G|1|BB|A|2002
4V4G|1|BB|A|2003
4V4G|1|BB|U|2004
4V4G|1|BB|U|2005
4V4G|1|BB|G|2006
*
4V4G|1|BB|C|2023
4V4G|1|BB|U|2024
4V4G|1|BB|A|2025
4V4G|1|BB|C|2026
*
4V4G|1|BB|G|2604
4V4G|1|BB|C|2605
4V4G|1|BB|G|2606
4V4G|1|BB|C|2607
4V4G|1|BB|A|2608
4V4G|1|BB|G|2609
*
4V4G|1|BB|C|2768
4V4G|1|BB|C|2769
4V4G|1|BB|A|2770
4V4G|1|BB|C|2771
4V4G|1|BB|U|2772
4V4G|1|BB|G|2773
4V4G|1|BB|U|2774
4V4G|1|BB|U|2778
4V4G|1|BB|C|2779
4V4G|1|BB|A|2780
4V4G|1|BB|G|2781
4V4G|1|BB|G|2782
4V4G|1|BB|U|2783
4V4G|1|BB|A|2784
4V4G|1|BB|A|2785
4V4G|1|BB|G|2786
4V4G|1|BB|A|2787
4V4G|1|BB|C|2788
4V4G|1|BB|U|2789
4V4G|1|BB|C|2790
4V4G|1|BB|C|2791
4V4G|1|BB|C|2792
*
4V4G|1|BB|G|2804
4V4G|1|BB|G|2805
4V4G|1|BB|G|2806
4V4G|1|BB|U|2807
4V4G|1|BB|U|2808
4V4G|1|BB|A|2809
4V4G|1|BB|A|2810
4V4G|1|BB|G|2811
4V4G|1|BB|A|2812
4V4G|1|BB|G|2813
4V4G|1|BB|G|2814
*
4V4G|1|BB|U|2853
4V4G|1|BB|G|2854
4V4G|1|BB|C|2855
4V4G|1|BB|U|2856
4V4G|1|BB|C|2857
4V4G|1|BB|A|2858
4V4G|1|BB|U|2859
4V4G|1|BB|C|2860
4V4G|1|BB|A|2861
4V4G|1|BB|G|2862
4V4G|1|BB|U|2863
4V4G|1|BB|C|2864
4V4G|1|BB|G|2865
4V4G|1|BB|A|2866
4V4G|1|BB|G|2867
4V4G|1|BB|G|2868
4V4G|1|BB|U|2869
Current chains
- Chain BB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L3
- Chain BF
- 50S ribosomal protein L4
- Chain BK
- 50S ribosomal protein L13
- Chain BO
- 50S ribosomal protein L17
- Chain BQ
- 50S ribosomal protein L19
- Chain BR
- 50S ribosomal protein L20
- Chain BS
- 50S ribosomal protein L21
- Chain BT
- 50S ribosomal protein L22
Coloring options: