J13_4V65_001
3D structure
- PDB id
- _4V6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Experimental method
- Resolution
Loop
- Sequence
- CGACUAAGCGUAC*GUACGUACAAGCAGUGGGAGCAC*GUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUU*AGACCCGAAAC*GAGAUAGCUGGUUCU*AGCGUUCU*AGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGC*GCUC*GCUUG*CAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACC*GGCGCUG*CC*GG
- Length
- 201 nucleotides
- Bulged bases
- 4V65|1|BB|A|10, 4V65|1|BB|C|11, 4V65|1|BB|U|12, 4V65|1|BB|C|527, 4V65|1|BB|G|533, 4V65|1|BB|G|555, 4V65|1|BB|U|566, 4V65|1|BB|U|569, 4V65|1|BB|U|573, 4V65|1|BB|U|576, 4V65|1|BB|G|583, 4V65|1|BB|C|584, 4V65|1|BB|C|587, 4V65|1|BB|G|805, 4V65|1|BB|U|807, 4V65|1|BB|G|809, 4V65|1|BB|U|810, 4V65|1|BB|U|1198, 4V65|1|BB|G|1248, 4V65|1|BB|C|1251, 4V65|1|BB|U|1255, 4V65|1|BB|G|1256, 4V65|1|BB|G|1271, 4V65|1|BB|A|1272, 4V65|1|BB|U|1273, 4V65|1|BB|A|1274, 4V65|1|BB|C|1646, 4V65|1|BB|U|1647, 4V65|1|BB|C|2025, 4V65|1|BB|U|2026, 4V65|1|BB|A|2031, 4V65|1|BB|C|2036, 4V65|1|BB|U|2629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V65|1|BB|C|8
4V65|1|BB|G|9
4V65|1|BB|A|10
4V65|1|BB|C|11
4V65|1|BB|U|12
4V65|1|BB|A|13
4V65|1|BB|A|14
4V65|1|BB|G|15
4V65|1|BB|C|16
4V65|1|BB|G|17
4V65|1|BB|U|18
4V65|1|BB|A|19
4V65|1|BB|C|20
*
4V65|1|BB|G|520
4V65|1|BB|U|521
4V65|1|BB|A|522
4V65|1|BB|C|523
4V65|1|BB|G|524
4V65|1|BB|U|525
4V65|1|BB|A|526
4V65|1|BB|C|527
4V65|1|BB|A|528
4V65|1|BB|A|529
4V65|1|BB|G|530
4V65|1|BB|C|531
4V65|1|BB|A|532
4V65|1|BB|G|533
4V65|1|BB|U|534
4V65|1|BB|G|535
4V65|1|BB|G|536
4V65|1|BB|G|537
4V65|1|BB|A|538
4V65|1|BB|G|539
4V65|1|BB|C|540
4V65|1|BB|A|541
4V65|1|BB|C|542
*
4V65|1|BB|G|551
4V65|1|BB|U|552
4V65|1|BB|G|553
4V65|1|BB|U|554
4V65|1|BB|G|555
4V65|1|BB|A|556
4V65|1|BB|C|557
4V65|1|BB|U|558
4V65|1|BB|G|559
4V65|1|BB|C|560
4V65|1|BB|G|561
4V65|1|BB|U|562
4V65|1|BB|A|563
4V65|1|BB|C|564
4V65|1|BB|C|565
4V65|1|BB|U|566
4V65|1|BB|U|567
4V65|1|BB|U|568
4V65|1|BB|U|569
4V65|1|BB|G|570
4V65|1|BB|U|571
4V65|1|BB|A|572
4V65|1|BB|U|573
4V65|1|BB|A|574
4V65|1|BB|A|575
4V65|1|BB|U|576
4V65|1|BB|G|577
4V65|1|BB|G|578
4V65|1|BB|G|579
4V65|1|BB|U|580
4V65|1|BB|C|581
4V65|1|BB|A|582
4V65|1|BB|G|583
4V65|1|BB|C|584
4V65|1|BB|G|585
4V65|1|BB|A|586
4V65|1|BB|C|587
4V65|1|BB|U|588
4V65|1|BB|U|589
*
4V65|1|BB|A|668
4V65|1|BB|G|669
4V65|1|BB|A|670
4V65|1|BB|C|671
4V65|1|BB|C|672
4V65|1|BB|C|673
4V65|1|BB|G|674
4V65|1|BB|A|675
4V65|1|BB|A|676
4V65|1|BB|A|677
4V65|1|BB|C|678
*
4V65|1|BB|G|799
4V65|1|BB|A|800
4V65|1|BB|G|801
4V65|1|BB|A|802
4V65|1|BB|U|803
4V65|1|BB|A|804
4V65|1|BB|G|805
4V65|1|BB|C|806
4V65|1|BB|U|807
4V65|1|BB|G|808
4V65|1|BB|G|809
4V65|1|BB|U|810
4V65|1|BB|U|811
4V65|1|BB|C|812
4V65|1|BB|U|813
*
4V65|1|BB|A|1194
4V65|1|BB|G|1195
4V65|1|BB|C|1196
4V65|1|BB|G|1197
4V65|1|BB|U|1198
4V65|1|BB|U|1199
4V65|1|BB|C|1200
4V65|1|BB|U|1201
*
4V65|1|BB|A|1244
4V65|1|BB|G|1245
4V65|1|BB|A|1246
4V65|1|BB|A|1247
4V65|1|BB|G|1248
4V65|1|BB|U|1249
4V65|1|BB|G|1250
4V65|1|BB|C|1251
4V65|1|BB|G|1252
4V65|1|BB|A|1253
4V65|1|BB|A|1254
4V65|1|BB|U|1255
4V65|1|BB|G|1256
4V65|1|BB|C|1257
4V65|1|BB|U|1258
4V65|1|BB|G|1259
4V65|1|BB|A|1260
4V65|1|BB|C|1261
4V65|1|BB|A|1262
4V65|1|BB|U|1263
4V65|1|BB|A|1264
4V65|1|BB|A|1265
4V65|1|BB|G|1266
4V65|1|BB|U|1267
4V65|1|BB|A|1268
4V65|1|BB|A|1269
4V65|1|BB|C|1270
4V65|1|BB|G|1271
4V65|1|BB|A|1272
4V65|1|BB|U|1273
4V65|1|BB|A|1274
4V65|1|BB|A|1275
4V65|1|BB|A|1276
4V65|1|BB|G|1277
4V65|1|BB|C|1278
*
4V65|1|BB|G|1292
4V65|1|BB|C|1293
4V65|1|BB|U|1294
4V65|1|BB|C|1295
*
4V65|1|BB|G|1645
4V65|1|BB|C|1646
4V65|1|BB|U|1647
4V65|1|BB|U|1648
4V65|1|BB|G|1649
*
4V65|1|BB|C|2008
4V65|1|BB|A|2009
4V65|1|BB|G|2010
4V65|1|BB|U|2011
4V65|1|BB|G|2012
4V65|1|BB|A|2013
4V65|1|BB|A|2014
4V65|1|BB|A|2015
4V65|1|BB|U|2016
4V65|1|BB|U|2017
4V65|1|BB|G|2018
4V65|1|BB|A|2019
4V65|1|BB|A|2020
4V65|1|BB|C|2021
4V65|1|BB|U|2022
4V65|1|BB|C|2023
4V65|1|BB|G|2024
4V65|1|BB|C|2025
4V65|1|BB|U|2026
4V65|1|BB|G|2027
4V65|1|BB|U|2028
4V65|1|BB|G|2029
4V65|1|BB|A|2030
4V65|1|BB|A|2031
4V65|1|BB|G|2032
4V65|1|BB|A|2033
4V65|1|BB|U|2034
4V65|1|BB|G|2035
4V65|1|BB|C|2036
4V65|1|BB|A|2037
4V65|1|BB|G|2038
4V65|1|BB|U|2039
4V65|1|BB|G|2040
4V65|1|BB|U|2041
4V65|1|BB|A|2042
4V65|1|BB|C|2043
4V65|1|BB|C|2044
*
4V65|1|BB|G|2624
4V65|1|BB|G|2625
4V65|1|BB|C|2626
4V65|1|BB|G|2627
4V65|1|BB|C|2628
4V65|1|BB|U|2629
4V65|1|BB|G|2630
*
4V65|1|BB|C|2788
4V65|1|BB|C|2789
*
4V65|1|BB|G|2894
4V65|1|BB|G|2895
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain B1
- 50S ribosomal protein L4
- Chain B6
- 50S ribosomal protein L13
- Chain BE
- 50S ribosomal protein L15
- Chain BG
- 50S ribosomal protein L17
- Chain BJ
- 50S ribosomal protein L20
- Chain BK
- 50S ribosomal protein L21
- Chain BL
- 50S ribosomal protein L22
- Chain BT
- 50S ribosomal protein L32
- Chain BW
- 50S ribosomal protein L35
- Chain BY
- 50S ribosomal protein L3
Coloring options: