J3_10PX_038

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_10PX_038 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0705

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

10PX|1|2A|G|30
10PX|1|2A|C|31
*
10PX|1|2A|G|474
10PX|1|2A|U|475
10PX|1|2A|G|476
10PX|1|2A|A|477
10PX|1|2A|A|478
10PX|1|2A|A|479
10PX|1|2A|A|480
10PX|1|2A|G|481
*
10PX|1|2A|C|509
10PX|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2Y

50S ribosomal protein L24