Loop J3_10PX

General information

3D structure

PDB id: 10PX (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å

Loop

Sequence: GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length: 28 nucleotides
Bulged bases: 10PX|1|2A|U|504, 10PX|1|2A|G|508
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

J3_10PX_039 not in the Motif Atlas
Homologous match to J3_7A0S_015: Geometric discrepancy: 0.2851; The information below is about J3_7A0S_015
Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J3_17917.2
Basepair signature: cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
Number of instances in this motif group: 10

Unit IDs

10PX|1|2A|G|30
10PX|1|2A|C|31
*
10PX|1|2A|G|474
10PX|1|2A|U|475
10PX|1|2A|G|476
10PX|1|2A|A|477
10PX|1|2A|A|478
10PX|1|2A|A|479
10PX|1|2A|A|480
10PX|1|2A|G|481
10PX|1|2A|A|482
10PX|1|2A|A|483
10PX|1|2A|C|484
*
10PX|1|2A|G|496
10PX|1|2A|A|497
10PX|1|2A|G|498
10PX|1|2A|U|499
10PX|1|2A|G|500
10PX|1|2A|A|501
10PX|1|2A|A|502
10PX|1|2A|A|503
10PX|1|2A|U|504
10PX|1|2A|A|505
10PX|1|2A|G|506
10PX|1|2A|A|507
10PX|1|2A|G|508
10PX|1|2A|C|509
10PX|1|2A|C|510

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 2U: 50S ribosomal protein L20
Chain 2W: 50S ribosomal protein L22
Chain 2Y: 50S ribosomal protein L24

Coloring options:
Nucleotide numbers

J3_10PX_039
J3_7A0S_015 (superposition may be poor)