J3_10PX_057

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

10PX|1|2a|A|50, 10PX|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_10PX_057 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.13

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

10PX|1|2a|G|46
10PX|1|2a|C|47
10PX|1|2a|C|48
10PX|1|2a|U|49
10PX|1|2a|A|50
10PX|1|2a|A|51
10PX|1|2a|G|52
*
10PX|1|2a|U|359
10PX|1|2a|A|360
10PX|1|2a|G|361
10PX|1|2a|G|362
10PX|1|2a|A|363
10PX|1|2a|A|364
10PX|1|2a|U|365
10PX|1|2a|C|366
10PX|1|2a|U|367
*
10PX|1|2a|A|393
10PX|1|2a|G|394
10PX|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16