J3_10QM_003
3D structure
- PDB id
- 10QM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli 50S ribosomal subunit bound to compound 48a
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 10QM|1|I|U|34, 10QM|1|I|U|448, 10QM|1|I|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_10QM_003 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3765
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
10QM|1|I|C|32
10QM|1|I|C|33
10QM|1|I|U|34
10QM|1|I|G|35
*
10QM|1|I|C|445
10QM|1|I|G|446
10QM|1|I|A|447
10QM|1|I|U|448
10QM|1|I|A|449
10QM|1|I|G|450
10QM|1|I|U|451
10QM|1|I|G|452
10QM|1|I|A|453
10QM|1|I|A|454
10QM|1|I|C|455
10QM|1|I|C|456
10QM|1|I|A|457
10QM|1|I|G|458
10QM|1|I|U|459
10QM|1|I|A|460
10QM|1|I|C|461
*
10QM|1|I|G|468
10QM|1|I|G|469
10QM|1|I|A|470
10QM|1|I|A|471
10QM|1|I|A|472
10QM|1|I|G|473
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain M
- Large ribosomal subunit protein uL4
- Chain Y
- 50S ribosomal protein L20
- Chain b
- 50S ribosomal protein L23
- Chain c
- 50S ribosomal protein L24
- Chain k
- 50S ribosomal protein L34
Coloring options: