J3_10QM_015
3D structure
- PDB id
- 10QM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli 50S ribosomal subunit bound to compound 48a
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 10QM|1|I|A|2388, 10QM|1|I|U|2390, 10QM|1|I|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_10QM_015 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1748
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
10QM|1|I|G|2282
10QM|1|I|C|2283
10QM|1|I|A|2284
*
10QM|1|I|U|2384
10QM|1|I|C|2385
10QM|1|I|A|2386
10QM|1|I|U|2387
10QM|1|I|A|2388
10QM|1|I|G|2389
10QM|1|I|U|2390
10QM|1|I|G|2391
10QM|1|I|A|2392
10QM|1|I|U|2393
10QM|1|I|C|2394
10QM|1|I|C|2395
*
10QM|1|I|G|2421
10QM|1|I|C|2422
10QM|1|I|U|2423
10QM|1|I|C|2424
10QM|1|I|A|2425
10QM|1|I|A|2426
10QM|1|I|C|2427
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain T
- Large ribosomal subunit protein uL15
- Chain e
- 50S ribosomal protein L27
- Chain j
- Large ribosomal subunit protein bL33
- Chain l
- Large ribosomal subunit protein bL35
Coloring options: