J3_11BQ_002
3D structure
- PDB id
- 11BQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 11BQ|1|A|C|48, 11BQ|1|A|A|50, 11BQ|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11BQ_002 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.1338
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
11BQ|1|A|G|46
11BQ|1|A|C|47
11BQ|1|A|C|48
11BQ|1|A|U|49
11BQ|1|A|A|50
11BQ|1|A|A|51
11BQ|1|A|C|52
*
11BQ|1|A|G|359
11BQ|1|A|G|360
11BQ|1|A|G|361
11BQ|1|A|G|362
11BQ|1|A|A|363
11BQ|1|A|A|364
11BQ|1|A|U|365
11BQ|1|A|A|366
11BQ|1|A|U|367
*
11BQ|1|A|A|393
11BQ|1|A|G|394
11BQ|1|A|C|395
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain P
- Small ribosomal subunit protein bS16
Coloring options: