J3_11BQ_020
3D structure
- PDB id
- 11BQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 11BQ|1|a|U|72, 11BQ|1|a|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11BQ_020 not in the Motif Atlas
- Homologous match to J3_7A0S_002
- Geometric discrepancy: 0.1627
- The information below is about J3_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
11BQ|1|a|A|56
11BQ|1|a|C|57
*
11BQ|1|a|G|70
11BQ|1|a|A|71
11BQ|1|a|U|72
11BQ|1|a|A|73
11BQ|1|a|A|74
11BQ|1|a|G|75
11BQ|1|a|C|76
*
11BQ|1|a|G|110
11BQ|1|a|A|111
11BQ|1|a|U|112
11BQ|1|a|U|113
11BQ|1|a|U|114
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain s
- 50S ribosomal protein L23
- Chain x
- Large ribosomal subunit protein uL29
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