J3_11DG_002

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

11DG|1|A|C|48, 11DG|1|A|A|50, 11DG|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11DG_002 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.166

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

11DG|1|A|G|46
11DG|1|A|C|47
11DG|1|A|C|48
11DG|1|A|U|49
11DG|1|A|A|50
11DG|1|A|A|51
11DG|1|A|C|52
*
11DG|1|A|G|359
11DG|1|A|G|360
11DG|1|A|G|361
11DG|1|A|G|362
11DG|1|A|A|363
11DG|1|A|A|364
11DG|1|A|U|365
11DG|1|A|A|366
11DG|1|A|U|367
*
11DG|1|A|A|393
11DG|1|A|G|394
11DG|1|A|C|395

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

Small ribosomal subunit protein bS16