Loop J3_11DG

3D structure

PDB id: 11DG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å

Loop

Sequence: CUUGACAUCCAGAGAAUCUA*UGGAGUGCCUUCGGGAGCUCUGAGACAG*CCUUACG
Length: 55 nucleotides
Bulged bases: 11DG|1|A|U|992, 11DG|1|A|U|997, 11DG|1|A|U|1030, 11DG|1|A|U|1040, 11DG|1|A|G|1043, 11DG|1|A|C|1215
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

11DG|1|A|C|990
11DG|1|A|U|991
11DG|1|A|U|992
11DG|1|A|G|993
11DG|1|A|A|994
11DG|1|A|C|995
11DG|1|A|A|996
11DG|1|A|U|997
11DG|1|A|C|998
11DG|1|A|C|999
11DG|1|A|A|1000
11DG|1|A|G|1001
11DG|1|A|A|1002
11DG|1|A|G|1003
11DG|1|A|A|1004
11DG|1|A|A|1005
11DG|1|A|U|1006
11DG|1|A|C|1007
11DG|1|A|U|1008
11DG|1|A|A|1009
*
11DG|1|A|U|1020
11DG|1|A|G|1021
11DG|1|A|G|1022
11DG|1|A|A|1023
11DG|1|A|G|1024
11DG|1|A|U|1025
11DG|1|A|G|1026
11DG|1|A|C|1027
11DG|1|A|C|1028
11DG|1|A|U|1029
11DG|1|A|U|1030
11DG|1|A|C|1031
11DG|1|A|G|1032
11DG|1|A|G|1033
11DG|1|A|G|1034
11DG|1|A|A|1035
11DG|1|A|G|1036
11DG|1|A|C|1037
11DG|1|A|U|1038
11DG|1|A|C|1039
11DG|1|A|U|1040
11DG|1|A|G|1041
11DG|1|A|A|1042
11DG|1|A|G|1043
11DG|1|A|A|1044
11DG|1|A|C|1045
11DG|1|A|A|1046
11DG|1|A|G|1047
*
11DG|1|A|C|1210
11DG|1|A|C|1211
11DG|1|A|U|1212
11DG|1|A|U|1213
11DG|1|A|A|1214
11DG|1|A|C|1215
11DG|1|A|G|1216

Current chains

Chain A: 16S ribosomal RNA

Nearby chains

Chain N: Small ribosomal subunit protein uS14

J3_11DG_009