J3_11DG_012
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 11DG|1|A|G|1157, 11DG|1|A|C|1159, 11DG|1|A|U|1184
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11DG|1|A|U|1116
11DG|1|A|A|1117
11DG|1|A|U|1118
*
11DG|1|A|A|1156
11DG|1|A|G|1157
11DG|1|A|A|1158
11DG|1|A|C|1159
11DG|1|A|U|1160
11DG|1|A|G|1161
11DG|1|A|C|1162
*
11DG|1|A|G|1176
11DG|1|A|A|1177
11DG|1|A|G|1178
11DG|1|A|G|1179
11DG|1|A|A|1180
11DG|1|A|A|1181
11DG|1|A|G|1182
11DG|1|A|G|1183
11DG|1|A|U|1184
11DG|1|A|G|1185
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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