J3_11DG_018

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

11DG|1|a|U|686, 11DG|1|a|A|792, 11DG|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11DG_018 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1954

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

11DG|1|a|U|683
11DG|1|a|G|684
11DG|1|a|A|685
11DG|1|a|U|686
11DG|1|a|C|687
11DG|1|a|U|688
11DG|1|a|A|689
*
11DG|1|a|U|773
11DG|1|a|G|774
11DG|1|a|G|775
*
11DG|1|a|C|791
11DG|1|a|A|792
11DG|1|a|A|793
11DG|1|a|A|794

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

50S ribosomal protein L2