J3_11FV_021

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

11FV|1|I|U|686, 11FV|1|I|A|792, 11FV|1|I|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11FV_021 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1968

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

11FV|1|I|U|683
11FV|1|I|G|684
11FV|1|I|A|685
11FV|1|I|U|686
11FV|1|I|C|687
11FV|1|I|U|688
11FV|1|I|A|689
*
11FV|1|I|U|773
11FV|1|I|G|774
11FV|1|I|G|775
*
11FV|1|I|C|791
11FV|1|I|A|792
11FV|1|I|A|793
11FV|1|I|A|794

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain k

Large ribosomal subunit protein bL34