J3_11HE_002

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

11HE|1|28|C|216, 11HE|1|28|C|217, 11HE|1|28|A|218, 11HE|1|28|G|219, 11HE|1|28|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HE|1|28|C|196
11HE|1|28|A|197
11HE|1|28|A|198
11HE|1|28|G|199
*
11HE|1|28|C|215
11HE|1|28|C|216
11HE|1|28|C|217
11HE|1|28|A|218
11HE|1|28|G|219
11HE|1|28|C|220
11HE|1|28|C|221
11HE|1|28|C|222
11HE|1|28|G|223
11HE|1|28|U|224
11HE|1|28|G|225
11HE|1|28|G|226
11HE|1|28|A|227
11HE|1|28|C|228
*
11HE|1|28|G|240
11HE|1|28|G|241
11HE|1|28|U|242
11HE|1|28|A|243
11HE|1|28|G|244

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain L4

60S ribosomal protein L4