J3_11HE_004

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HE_004 not in the Motif Atlas

Geometric match to J3_8GLP_025

Geometric discrepancy: 0.0576

The information below is about J3_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

11HE|1|28|U|380
11HE|1|28|U|381
11HE|1|28|G|382
11HE|1|28|A|383
11HE|1|28|A|384
11HE|1|28|A|385
11HE|1|28|A|386
11HE|1|28|G|387
*
11HE|1|28|C|414
11HE|1|28|G|415
*
11HE|1|58|C|19
11HE|1|58|A|20

Current chains

Chain 28

28S rRNA

Chain 58

5.8S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain 39

60S ribosomal protein L39

Chain L4

60S ribosomal protein L4