J3_11HE_009
3D structure
- PDB id
- 11HE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 11HE|1|28|A|1805, 11HE|1|28|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11HE_009 not in the Motif Atlas
- Homologous match to J3_8GLP_029
- Geometric discrepancy: 0.156
- The information below is about J3_8GLP_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.2
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
11HE|1|28|U|1726
11HE|1|28|U|1727
*
11HE|1|28|A|1802
11HE|1|28|G|1803
11HE|1|28|A|1804
11HE|1|28|A|1805
11HE|1|28|G|1806
*
11HE|1|28|C|1832
11HE|1|28|G|1833
11HE|1|28|U|1834
11HE|1|28|G|1835
11HE|1|28|G|1836
11HE|1|28|A|1837
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 21
- 60S ribosomal protein L21
- Chain 29
- Large ribosomal subunit protein eL29
- Chain L7
- 60S ribosomal protein L7
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