J3_11HE_023
3D structure
- PDB id
- 11HE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 11HE|1|28|A|4464, 11HE|1|28|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11HE_023 not in the Motif Atlas
- Homologous match to J3_9PN5_022
- Geometric discrepancy: 0.0977
- The information below is about J3_9PN5_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.4
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
11HE|1|28|U|4463
11HE|1|28|A|4464
11HE|1|28|U|4465
11HE|1|28|C|4466
*
11HE|1|28|G|4491
11HE|1|28|U|4492
11HE|1|28|U|4493
*
11HE|1|28|A|4507
11HE|1|28|C|4508
11HE|1|28|U|4509
11HE|1|28|A|4510
11HE|1|28|A|4511
11HE|1|28|U|4512
11HE|1|28|A|4513
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 23
- 60S ribosomal protein L23
- Chain L3
- 60S ribosomal protein L3
- Chain bb
- Large ribosomal subunit protein uL13
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