J3_11HE_027

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AC*GAGAAUU*ACACU

Length

14 nucleotides

Bulged bases

11HE|1|58|A|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HE_027 not in the Motif Atlas

Homologous match to J3_8GLP_039

Geometric discrepancy: 0.0523

The information below is about J3_8GLP_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.3

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

11HE|1|58|A|44
11HE|1|58|C|45
*
11HE|1|58|G|58
11HE|1|58|A|59
11HE|1|58|G|60
11HE|1|58|A|61
11HE|1|58|A|62
11HE|1|58|U|63
11HE|1|58|U|64
*
11HE|1|58|A|95
11HE|1|58|C|96
11HE|1|58|A|97
11HE|1|58|C|98
11HE|1|58|U|99

Current chains

Chain 58

5.8S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 35

60S ribosomal protein L35

Chain 37

60S ribosomal protein L37

Chain 39

60S ribosomal protein L39

Chain cc

Large ribosomal subunit protein uL23