J3_11HG_001

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HG_001 not in the Motif Atlas

Homologous match to J3_9H3G_028

Geometric discrepancy: 0.1448

The information below is about J3_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

11HG|1|18|A|40
11HG|1|18|G|41
*
11HG|1|18|C|481
11HG|1|18|G|482
11HG|1|18|C|483
11HG|1|18|A|484
11HG|1|18|A|485
11HG|1|18|A|486
11HG|1|18|U|487
*
11HG|1|18|A|512
11HG|1|18|G|513
11HG|1|18|U|514

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

uS12

Chain S9

40S ribosomal protein S9

Chain v

Elongation factor 2