J3_11HG_004
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11HG_004 not in the Motif Atlas
- Homologous match to J3_9H3G_032
- Geometric discrepancy: 0.1752
- The information below is about J3_9H3G_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.5
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
11HG|1|18|A|816
11HG|1|18|G|817
11HG|1|18|A|818
11HG|1|18|G|819
*
11HG|1|18|C|829
11HG|1|18|A|830
11HG|1|18|G|831
*
11HG|1|18|C|843
11HG|1|18|U|844
11HG|1|18|G|845
11HG|1|18|G|846
11HG|1|18|A|847
11HG|1|18|U|848
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain S4
- 40S ribosomal protein S4
- Chain S9
- 40S ribosomal protein S9
- Chain SS
- 40S ribosomal protein S24
Coloring options: