J3_11HG_009

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

11HG|1|18|G|1256, 11HG|1|18|A|1258, 11HG|1|18|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HG_009 not in the Motif Atlas

Homologous match to J3_9PN5_037

Geometric discrepancy: 0.1062

The information below is about J3_9PN5_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

11HG|1|18|C|1237
11HG|1|18|U|1238
11HG|1|18|U|1239
11HG|1|18|A|1240
11HG|1|18|A|1241
11HG|1|18|U|1242
11HG|1|18|U|1243
11HG|1|18|U|1244
*
11HG|1|18|G|1255
11HG|1|18|G|1256
11HG|1|18|G|1257
11HG|1|18|A|1258
11HG|1|18|A|1259
11HG|1|18|A|1260
11HG|1|18|C|1261
11HG|1|18|C|1262
11HG|1|18|U|1263
11HG|1|18|C|1264
11HG|1|18|A|1265
11HG|1|18|C|1266
*
11HG|1|18|G|1516
11HG|1|18|G|1517
11HG|1|18|C|1518
11HG|1|18|U|1519
11HG|1|18|G|1520

Current chains

Chain 18

18S rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS19

Chain LL

40S ribosomal protein S18

Chain OO

40S ribosomal protein S20

Chain XX

40S ribosomal protein S29

Chain ZZ

40S ribosomal protein S27a