J3_11HG_018

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

11HG|1|28|C|704, 11HG|1|28|U|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HG_018 not in the Motif Atlas

Homologous match to J3_8GLP_027

Geometric discrepancy: 0.2943

The information below is about J3_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HG|1|28|C|451
11HG|1|28|A|452
11HG|1|28|G|453
11HG|1|28|U|454
11HG|1|28|C|455
*
11HG|1|28|G|701
11HG|1|28|U|702
11HG|1|28|G|703
11HG|1|28|C|704
11HG|1|28|G|705
*
11HG|1|28|C|1292
11HG|1|28|G|1293
11HG|1|28|A|1294
11HG|1|28|U|1295
11HG|1|28|G|1296

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain L6

Large ribosomal subunit protein eL6

Chain ee

Large ribosomal subunit protein eL33