J3_11HG_019

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

11HG|1|28|A|1534, 11HG|1|28|G|1641, 11HG|1|28|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HG_019 not in the Motif Atlas

Homologous match to J3_9PN5_008

Geometric discrepancy: 0.0598

The information below is about J3_9PN5_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

12

Unit IDs

11HG|1|28|U|1531
11HG|1|28|G|1532
11HG|1|28|A|1533
11HG|1|28|A|1534
11HG|1|28|C|1535
11HG|1|28|U|1536
11HG|1|28|A|1537
*
11HG|1|28|U|1622
11HG|1|28|A|1623
11HG|1|28|G|1624
*
11HG|1|28|C|1640
11HG|1|28|G|1641
11HG|1|28|A|1642
11HG|1|28|A|1643

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain 37

60S ribosomal protein L37

Chain 39

60S ribosomal protein L39

Chain L8

60S ribosomal protein L8