J3_11HG_031

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

11HG|1|28|C|4116, 11HG|1|28|U|4117, 11HG|1|28|U|4118, 11HG|1|28|C|4119, 11HG|1|28|U|4120, 11HG|1|28|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HG_031 not in the Motif Atlas

Homologous match to J3_8GLP_008

Geometric discrepancy: 0.2041

The information below is about J3_8GLP_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HG|1|28|G|4091
11HG|1|28|G|4092
11HG|1|28|G|4093
11HG|1|28|G|4094
*
11HG|1|28|C|4114
11HG|1|28|G|4115
11HG|1|28|C|4116
11HG|1|28|U|4117
11HG|1|28|U|4118
11HG|1|28|C|4119
11HG|1|28|U|4120
11HG|1|28|G|4121
11HG|1|28|G|4122
11HG|1|28|C|4123
11HG|1|28|G|4124
11HG|1|28|C|4125
11HG|1|28|C|4126
11HG|1|28|A|4127
11HG|1|28|A|4128
11HG|1|28|G|4129
*
11HG|1|28|C|4155
11HG|1|28|G|4156
11HG|1|28|A|4157
11HG|1|28|C|4158

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 27

60S ribosomal protein L27

Chain 30

60S ribosomal protein L30

Chain 34

60S ribosomal protein L34

Chain L8

60S ribosomal protein L8

Chain aa

Large ribosomal subunit protein eL8

Chain cc

Large ribosomal subunit protein uL23

Chain ff

60S ribosomal protein L37a