J3_11HG_032

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

11HG|1|28|C|4337, 11HG|1|28|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HG_032 not in the Motif Atlas

Homologous match to J3_8GLP_034

Geometric discrepancy: 0.0514

The information below is about J3_8GLP_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.3

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

11HG|1|28|G|4228
11HG|1|28|U|4229
11HG|1|28|C|4230
*
11HG|1|28|G|4331
11HG|1|28|C|4332
11HG|1|28|C|4333
11HG|1|28|U|4334
11HG|1|28|C|4335
11HG|1|28|A|4336
11HG|1|28|C|4337
11HG|1|28|G|4338
11HG|1|28|A|4339
11HG|1|28|U|4340
11HG|1|28|C|4341
11HG|1|28|C|4342
*
11HG|1|28|G|4370
11HG|1|28|G|4371
11HG|1|28|U|4372
11HG|1|28|G|4373
11HG|1|28|U|4374
11HG|1|28|C|4375

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 42

eL42

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a