J3_11HG_033
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 11HG|1|28|A|4280, 11HG|1|28|A|4282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11HG_033 not in the Motif Atlas
- Homologous match to J3_8GLP_009
- Geometric discrepancy: 0.0511
- The information below is about J3_8GLP_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.4
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
11HG|1|28|C|4241
11HG|1|28|U|4242
11HG|1|28|C|4243
*
11HG|1|28|G|4267
11HG|1|28|A|4268
11HG|1|28|G|4269
*
11HG|1|28|C|4278
11HG|1|28|A|4279
11HG|1|28|A|4280
11HG|1|28|A|4281
11HG|1|28|A|4282
11HG|1|28|G|4283
Current chains
- Chain 28
- 28s rRNA
Nearby chains
- Chain 11
- 60S ribosomal protein L11
- Chain 21
- 60S ribosomal protein L21
- Chain 6
- 5S ribosomal RNA; 5S rRNA
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain L5
- 60S ribosomal protein L5
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