J3_11HG_035

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

11HG|1|28|U|4882, 11HG|1|28|A|4938, 11HG|1|28|C|4940, 11HG|1|28|A|4943, 11HG|1|28|C|4944, 11HG|1|28|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HG|1|28|C|4749
11HG|1|28|G|4750
11HG|1|28|G|4751
11HG|1|28|U|4752
11HG|1|28|U|4753
11HG|1|28|G|4754
*
11HG|1|28|C|4879
11HG|1|28|C|4880
11HG|1|28|U|4881
11HG|1|28|U|4882
11HG|1|28|C|4883
*
11HG|1|28|G|4936
11HG|1|28|C|4937
11HG|1|28|A|4938
11HG|1|28|C|4939
11HG|1|28|C|4940
11HG|1|28|G|4941
11HG|1|28|C|4942
11HG|1|28|A|4943
11HG|1|28|C|4944
11HG|1|28|G|4945
11HG|1|28|U|4946
11HG|1|28|U|4947
11HG|1|28|C|4948
11HG|1|28|G|4949
11HG|1|28|U|4950
11HG|1|28|G|4951

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain L6

Large ribosomal subunit protein eL6

Chain bb

Large ribosomal subunit protein uL13

Chain ee

Large ribosomal subunit protein eL33