J3_11KH_007

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

11KH|1|18|G|1256, 11KH|1|18|A|1258, 11KH|1|18|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11KH_007 not in the Motif Atlas

Homologous match to J3_9PN5_037

Geometric discrepancy: 0.1498

The information below is about J3_9PN5_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

11KH|1|18|C|1237
11KH|1|18|U|1238
11KH|1|18|U|1239
11KH|1|18|A|1240
11KH|1|18|A|1241
11KH|1|18|U|1242
11KH|1|18|U|1243
11KH|1|18|U|1244
*
11KH|1|18|G|1255
11KH|1|18|G|1256
11KH|1|18|G|1257
11KH|1|18|A|1258
11KH|1|18|A|1259
11KH|1|18|A|1260
11KH|1|18|C|1261
11KH|1|18|C|1262
11KH|1|18|U|1263
11KH|1|18|C|1264
11KH|1|18|A|1265
11KH|1|18|C|1266
*
11KH|1|18|G|1516
11KH|1|18|G|1517
11KH|1|18|C|1518
11KH|1|18|U|1519
11KH|1|18|G|1520

Current chains

Chain 18

18S rRNA

Nearby chains

Chain HH

40S ribosomal protein S15

Chain LL

40S ribosomal protein S18

Chain OO

40S ribosomal protein S20

Chain XX

40S ribosomal protein S29

Chain ZZ

40S ribosomal protein S27a