J3_11KH_008
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 11KH|1|18|G|1274, 11KH|1|18|G|1507, 11KH|1|18|U|1509
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_008 not in the Motif Atlas
- Homologous match to J3_9H3G_038
- Geometric discrepancy: 0.1815
- The information below is about J3_9H3G_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.4
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
11KH|1|18|C|1272
11KH|1|18|C|1273
11KH|1|18|G|1274
11KH|1|18|G|1275
11KH|1|18|A|1276
11KH|1|18|C|1277
*
11KH|1|18|G|1320
11KH|1|18|G|1321
11KH|1|18|G|1322
11KH|1|18|U|1323
11KH|1|18|G|1324
*
11KH|1|18|U|1504
11KH|1|18|U|1505
11KH|1|18|A|1506
11KH|1|18|G|1507
11KH|1|18|A|1508
11KH|1|18|U|1509
11KH|1|18|G|1510
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S10
- Chain XX
- 40S ribosomal protein S29
- Chain ZZ
- 40S ribosomal protein S27a
Coloring options: