J3_11KH_016
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 11KH|1|28|G|409, 11KH|1|28|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_016 not in the Motif Atlas
- Homologous match to J3_8GLP_026
- Geometric discrepancy: 0.0743
- The information below is about J3_8GLP_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.4
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
11KH|1|28|U|380
11KH|1|28|U|381
11KH|1|28|G|382
11KH|1|28|A|383
11KH|1|28|A|384
11KH|1|28|A|385
11KH|1|28|A|386
11KH|1|28|G|387
11KH|1|28|A|388
11KH|1|28|A|389
11KH|1|28|C|390
*
11KH|1|28|G|401
11KH|1|28|A|402
11KH|1|28|G|403
11KH|1|28|U|404
11KH|1|28|U|405
11KH|1|28|C|406
11KH|1|28|A|407
11KH|1|28|A|408
11KH|1|28|G|409
11KH|1|28|A|410
11KH|1|28|G|411
11KH|1|28|G|412
11KH|1|28|G|413
11KH|1|28|C|414
11KH|1|28|G|415
*
11KH|1|58|C|19
11KH|1|58|A|20
Current chains
- Chain 28
- 28S rRNA
- Chain 58
- 5.8S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 26
- 60S ribosomal protein L26
- Chain 39
- 60S ribosomal protein L39
- Chain F
- Proliferation-associated protein 2G4
- Chain L4
- 60S ribosomal protein L4
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