J3_11KH_021

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUG*CGCUAAGG*CACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|G|1968
11KH|1|28|G|1969
11KH|1|28|A|1970
11KH|1|28|U|1971
11KH|1|28|G|1972
*
11KH|1|28|C|1994
11KH|1|28|G|1995
11KH|1|28|C|1996
11KH|1|28|U|1997
11KH|1|28|A|1998
11KH|1|28|A|1999
11KH|1|28|G|2000
11KH|1|28|G|2001
*
11KH|1|28|C|2016
11KH|1|28|A|2017
11KH|1|28|C|2018
11KH|1|28|C|2019

Current chains

Chain 28

28S rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL11