J3_11KH_024

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11KH_024 not in the Motif Atlas

Homologous match to J3_8GLP_030

Geometric discrepancy: 0.0714

The information below is about J3_8GLP_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.3

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

11KH|1|28|U|2440
11KH|1|28|C|2441
11KH|1|28|G|2442
11KH|1|28|G|2443
11KH|1|28|U|2444
11KH|1|28|C|2445
*
11KH|1|28|G|2515
11KH|1|28|G|2516
11KH|1|28|A|2517
11KH|1|28|G|2518
11KH|1|28|U|2519
*
11KH|1|28|A|2536
11KH|1|28|A|2537

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 34

60S ribosomal protein L34

Chain 38

Large ribosomal subunit protein eL38

Chain 39

60S ribosomal protein L39

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain cc

Large ribosomal subunit protein uL23