J3_11KH_029
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 11KH|1|28|C|4116, 11KH|1|28|U|4117, 11KH|1|28|U|4118, 11KH|1|28|C|4119, 11KH|1|28|U|4120, 11KH|1|28|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11KH|1|28|G|4091
11KH|1|28|G|4092
11KH|1|28|G|4093
11KH|1|28|G|4094
11KH|1|28|G|4095
11KH|1|28|C|4096
11KH|1|28|G|4097
*
11KH|1|28|C|4112
11KH|1|28|U|4113
11KH|1|28|C|4114
11KH|1|28|G|4115
11KH|1|28|C|4116
11KH|1|28|U|4117
11KH|1|28|U|4118
11KH|1|28|C|4119
11KH|1|28|U|4120
11KH|1|28|G|4121
11KH|1|28|G|4122
11KH|1|28|C|4123
11KH|1|28|G|4124
11KH|1|28|C|4125
11KH|1|28|C|4126
11KH|1|28|A|4127
11KH|1|28|A|4128
11KH|1|28|G|4129
*
11KH|1|28|C|4155
11KH|1|28|G|4156
11KH|1|28|A|4157
11KH|1|28|C|4158
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 27
- 60S ribosomal protein L27
- Chain 30
- 60S ribosomal protein L30
- Chain 34
- 60S ribosomal protein L34
- Chain L8
- 60S ribosomal protein L8
- Chain aa
- Large ribosomal subunit protein eL8
- Chain cc
- Large ribosomal subunit protein uL23
- Chain ff
- 60S ribosomal protein L37a
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