J3_11KH_031

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

11KH|1|28|A|4280, 11KH|1|28|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11KH_031 not in the Motif Atlas

Homologous match to J3_8GLP_009

Geometric discrepancy: 0.0752

The information below is about J3_8GLP_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.3

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

11KH|1|28|C|4241
11KH|1|28|U|4242
11KH|1|28|C|4243
*
11KH|1|28|G|4267
11KH|1|28|A|4268
11KH|1|28|G|4269
*
11KH|1|28|C|4278
11KH|1|28|A|4279
11KH|1|28|A|4280
11KH|1|28|A|4281
11KH|1|28|A|4282
11KH|1|28|G|4283

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 11

60S ribosomal protein L11

Chain 21

60S ribosomal protein L21

Chain 5

5S ribosomal RNA; 5S rRNA

Chain L5

60S ribosomal protein L5