J3_11KH_032
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 11KH|1|28|A|4464, 11KH|1|28|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_032 not in the Motif Atlas
- Homologous match to J3_9PN5_022
- Geometric discrepancy: 0.0817
- The information below is about J3_9PN5_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.3
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
11KH|1|28|U|4463
11KH|1|28|A|4464
11KH|1|28|U|4465
11KH|1|28|C|4466
*
11KH|1|28|G|4491
11KH|1|28|U|4492
11KH|1|28|U|4493
*
11KH|1|28|A|4507
11KH|1|28|C|4508
11KH|1|28|U|4509
11KH|1|28|A|4510
11KH|1|28|A|4511
11KH|1|28|U|4512
11KH|1|28|A|4513
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 23
- 60S ribosomal protein L23
- Chain L3
- 60S ribosomal protein L3
- Chain bb
- Large ribosomal subunit protein uL13
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