J3_11KH_033

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

11KH|1|28|U|4882, 11KH|1|28|A|4938, 11KH|1|28|C|4940, 11KH|1|28|A|4943, 11KH|1|28|C|4944, 11KH|1|28|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|C|4749
11KH|1|28|G|4750
11KH|1|28|G|4751
11KH|1|28|U|4752
11KH|1|28|U|4753
11KH|1|28|G|4754
*
11KH|1|28|C|4879
11KH|1|28|C|4880
11KH|1|28|U|4881
11KH|1|28|U|4882
11KH|1|28|C|4883
*
11KH|1|28|G|4936
11KH|1|28|C|4937
11KH|1|28|A|4938
11KH|1|28|C|4939
11KH|1|28|C|4940
11KH|1|28|G|4941
11KH|1|28|C|4942
11KH|1|28|A|4943
11KH|1|28|C|4944
11KH|1|28|G|4945
11KH|1|28|U|4946
11KH|1|28|U|4947
11KH|1|28|C|4948
11KH|1|28|G|4949
11KH|1|28|U|4950
11KH|1|28|G|4951

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain L6

large ribosomal subunit protein eL6

Chain bb

Large ribosomal subunit protein uL13

Chain ee

Large ribosomal subunit protein eL33