J3_12DP_003
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 12DP|1|1A|U|448, 12DP|1|1A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_12DP_003 not in the Motif Atlas
- Homologous match to J3_8B0X_033
- Geometric discrepancy: 0.1838
- The information below is about J3_8B0X_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.4
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 12
Unit IDs
12DP|1|1A|C|32
12DP|1|1A|U|33
12DP|1|1A|C|34
12DP|1|1A|G|35
*
12DP|1|1A|C|445
12DP|1|1A|G|446
12DP|1|1A|A|447
12DP|1|1A|U|448
12DP|1|1A|A|449
12DP|1|1A|G|450
12DP|1|1A|C|451
12DP|1|1A|G|452
12DP|1|1A|C|453
12DP|1|1A|A|454
12DP|1|1A|C|455
12DP|1|1A|C|456
12DP|1|1A|A|457
12DP|1|1A|G|458
12DP|1|1A|U|459
12DP|1|1A|A|460
12DP|1|1A|C|461
*
12DP|1|1A|G|468
12DP|1|1A|G|469
12DP|1|1A|A|470
12DP|1|1A|A|471
12DP|1|1A|A|472
12DP|1|1A|G|473
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1F
- 50S ribosomal protein L4
- Chain 1U
- 50S ribosomal protein L20
- Chain 1X
- 50S ribosomal protein L23
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