J3_12DP_008

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_008 not in the Motif Atlas

Homologous match to J3_8B0X_017

Geometric discrepancy: 0.069

The information below is about J3_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.4

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

12

Unit IDs

12DP|1|1A|C|698
12DP|1|1A|A|699
12DP|1|1A|G|700
*
12DP|1|1A|C|732
12DP|1|1A|G|733
12DP|1|1A|A|734
12DP|1|1A|A|735
12DP|1|1A|C|736
*
12DP|1|1A|G|760
12DP|1|1A|A|761
12DP|1|1A|U|762
12DP|1|1A|G|763

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2