J3_12DP_026

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_026 not in the Motif Atlas

Homologous match to J3_8B0X_005

Geometric discrepancy: 0.0865

The information below is about J3_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

7

Unit IDs

12DP|1|1a|C|936
12DP|1|1a|A|937
12DP|1|1a|A|938
12DP|1|1a|G|939
*
12DP|1|1a|C|1344
12DP|1|1a|U|1345
12DP|1|1a|A|1346
12DP|1|1a|G|1347
12DP|1|1a|U|1348
12DP|1|1a|A|1349
12DP|1|1a|A|1350
*
12DP|1|1a|U|1372
12DP|1|1a|G|1373
12DP|1|1a|A|1374
12DP|1|1a|A|1375
12DP|1|1a|U|1376
12DP|1|1a|A|1377
12DP|1|1a|C|1378
12DP|1|1a|G|1379

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9