J3_12DP_063

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

12DP|1|2a|A|975, 12DP|1|2a|G|976, 12DP|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_063 not in the Motif Atlas

Homologous match to J3_8B0X_007

Geometric discrepancy: 0.1001

The information below is about J3_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

12DP|1|2a|U|955
12DP|1|2a|U|956
12DP|1|2a|U|957
12DP|1|2a|A|958
12DP|1|2a|A|959
12DP|1|2a|U|960
12DP|1|2a|U|961
12DP|1|2a|C|962
*
12DP|1|2a|G|973
12DP|1|2a|A|974
12DP|1|2a|A|975
12DP|1|2a|G|976
12DP|1|2a|A|977
12DP|1|2a|A|978
12DP|1|2a|C|979
12DP|1|2a|C|980
12DP|1|2a|U|981
12DP|1|2a|U|982
12DP|1|2a|A|983
12DP|1|2a|C|984
*
12DP|1|2a|G|1221
12DP|1|2a|G|1222
12DP|1|2a|C|1223
12DP|1|2a|G|1224
12DP|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19