J3_12DQ_007

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

12DQ|1|1A|G|686, 12DQ|1|1A|G|792, 12DQ|1|1A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_007 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1509

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

12

Unit IDs

12DQ|1|1A|C|683
12DQ|1|1A|G|684
12DQ|1|1A|A|685
12DQ|1|1A|G|686
12DQ|1|1A|C|687
12DQ|1|1A|U|688
12DQ|1|1A|A|689
*
12DQ|1|1A|U|773
12DQ|1|1A|A|774
12DQ|1|1A|G|775
*
12DQ|1|1A|C|791
12DQ|1|1A|G|792
12DQ|1|1A|A|793
12DQ|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2