J3_12DQ_015
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 12DQ|1|1A|A|2388, 12DQ|1|1A|U|2390, 12DQ|1|1A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_12DQ_015 not in the Motif Atlas
- Homologous match to J3_8B0X_036
- Geometric discrepancy: 0.1339
- The information below is about J3_8B0X_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.4
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
12DQ|1|1A|G|2282
12DQ|1|1A|C|2283
12DQ|1|1A|C|2284
*
12DQ|1|1A|G|2384
12DQ|1|1A|C|2385
12DQ|1|1A|C|2386
12DQ|1|1A|U|2387
12DQ|1|1A|A|2388
12DQ|1|1A|G|2389
12DQ|1|1A|U|2390
12DQ|1|1A|G|2391
12DQ|1|1A|A|2392
12DQ|1|1A|A|2393
12DQ|1|1A|C|2394
12DQ|1|1A|C|2395
*
12DQ|1|1A|G|2421
12DQ|1|1A|A|2422
12DQ|1|1A|U|2423
12DQ|1|1A|C|2424
12DQ|1|1A|A|2425
12DQ|1|1A|A|2426
12DQ|1|1A|C|2427
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
- Chain 1Z
- 50S ribosomal protein L25
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