J3_12DQ_045
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- GGA*UUUAAAGAGUG*CUCAC
- Length
- 19 nucleotides
- Bulged bases
- 12DQ|1|2A|U|1082, 12DQ|1|2A|U|1083, 12DQ|1|2A|A|1086, 12DQ|1|2A|A|1088
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
12DQ|1|2A|G|1055
12DQ|1|2A|G|1056
12DQ|1|2A|A|1057
*
12DQ|1|2A|U|1081
12DQ|1|2A|U|1082
12DQ|1|2A|U|1083
12DQ|1|2A|A|1084
12DQ|1|2A|A|1085
12DQ|1|2A|A|1086
12DQ|1|2A|G|1087
12DQ|1|2A|A|1088
12DQ|1|2A|G|1089
12DQ|1|2A|U|1090
12DQ|1|2A|G|1091
*
12DQ|1|2A|C|1100
12DQ|1|2A|U|1101
12DQ|1|2A|C|1102
12DQ|1|2A|A|1103
12DQ|1|2A|C|1104
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L36
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