J3_12DQ_064

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

12DQ|1|2a|A|975, 12DQ|1|2a|G|976, 12DQ|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_064 not in the Motif Atlas

Homologous match to J3_8B0X_007

Geometric discrepancy: 0.0993

The information below is about J3_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

12DQ|1|2a|U|955
12DQ|1|2a|U|956
12DQ|1|2a|U|957
12DQ|1|2a|A|958
12DQ|1|2a|A|959
12DQ|1|2a|U|960
12DQ|1|2a|U|961
12DQ|1|2a|C|962
*
12DQ|1|2a|G|973
12DQ|1|2a|A|974
12DQ|1|2a|A|975
12DQ|1|2a|G|976
12DQ|1|2a|A|977
12DQ|1|2a|A|978
12DQ|1|2a|C|979
12DQ|1|2a|C|980
12DQ|1|2a|U|981
12DQ|1|2a|U|982
12DQ|1|2a|A|983
12DQ|1|2a|C|984
*
12DQ|1|2a|G|1221
12DQ|1|2a|G|1222
12DQ|1|2a|C|1223
12DQ|1|2a|G|1224
12DQ|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2y

Ribosome-associated inhibitor A