J3_1FFK_004

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1FFK|1|0|U|1702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FFK_004 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0444

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1FFK|1|0|C|1404
1FFK|1|0|U|1405
1FFK|1|0|A|1406
1FFK|1|0|A|1407
1FFK|1|0|U|1408
1FFK|1|0|G|1409
*
1FFK|1|0|C|1700
1FFK|1|0|A|1701
1FFK|1|0|U|1702
1FFK|1|0|G|1703
*
1FFK|1|0|C|1715
1FFK|1|0|A|1716
1FFK|1|0|A|1717
1FFK|1|0|G|1718

Current chains

Chain 0

23S RRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN L19