J3_1FFZ_002

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

1FFZ|1|A|A|2368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FFZ_002 not in the Motif Atlas

Homologous match to J3_4V9F_008

Geometric discrepancy: 0.0625

The information below is about J3_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.1

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

1FFZ|1|A|C|2329
1FFZ|1|A|U|2330
1FFZ|1|A|C|2331
*
1FFZ|1|A|G|2355
1FFZ|1|A|A|2356
1FFZ|1|A|G|2357
*
1FFZ|1|A|C|2366
1FFZ|1|A|A|2367
1FFZ|1|A|A|2368
1FFZ|1|A|A|2369
1FFZ|1|A|A|2370
1FFZ|1|A|G|2371

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains