J3_1FJG_002

3D structure

PDB id

1FJG (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FJG_002 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0457

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

1FJG|1|A|C|936
1FJG|1|A|A|937
1FJG|1|A|A|938
1FJG|1|A|G|939
*
1FJG|1|A|C|1344
1FJG|1|A|U|1345
1FJG|1|A|A|1346
1FJG|1|A|G|1347
1FJG|1|A|U|1348
1FJG|1|A|A|1349
1FJG|1|A|A|1350
*
1FJG|1|A|U|1372
1FJG|1|A|G|1373
1FJG|1|A|A|1374
1FJG|1|A|A|1375
1FJG|1|A|U|1376
1FJG|1|A|A|1377
1FJG|1|A|C|1378
1FJG|1|A|G|1379

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

30S RIBOSOMAL PROTEIN S7

Chain I

30S RIBOSOMAL PROTEIN S9